PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014725
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 219aa    MW: 25430.8 Da    PI: 8.8798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014725genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-24105165259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK++ + ++pr+Y+rCt++   gC++ k+v+r +e+p ++ itY g+H+++
  PGSC0003DMP400014725 105 YDGHAWRKYGQKKILNDKYPRNYFRCTHKfdqGCQANKQVQRIQENPPLFRITYYGHHTCK 165
                           59**************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-2691165IPR003657WRKY domain
PROSITE profilePS5081119.88799162IPR003657WRKY domain
SuperFamilySSF1182902.22E-24100166IPR003657WRKY domain
SMARTSM007743.3E-35104166IPR003657WRKY domain
PfamPF031067.0E-24106165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKSSLLKNKT SDLEKIIVEL NRGREFTCRL REILKKHVDH VDDEDAYMLV GKIMSSFCAT  60
LSILSSNEDS SSSSCKISSL KDQRGRYKRR RTLETSIKET STLVYDGHAW RKYGQKKILN  120
DKYPRNYFRC THKFDQGCQA NKQVQRIQEN PPLFRITYYG HHTCKTCPKV SQMICDSPND  180
HEDSNSVLLN FNSTNNNYNN HHHFLGMMVE TVDLSFEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-115HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543153.11e-110PREDICTED: probable WRKY transcription factor 70
TrEMBLM1AFF61e-164M1AFF6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000216251e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-30WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]